Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGG----DHCAEHGCY---VVDGHCI------------------RTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSIIQAGIKKVYFAKDY-KNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLVKEAAVEVNIDPEKAEQLYQSISEKLN
1VQ2 Chain:A ((10-193))
-------------AYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNK-------RFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRNAGIEV----FNVPKKNLNKLNWENINEFCGE------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VQ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91435 for 1039 contacts (-88.0/contact) +
2D Compatibility (PS) -14595 + (NN) -3474 + (LL) 4636
1D Compatibility (HY) -8800 + (ID) 2950
Total energy: -116618.0 ( -112.24 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ2-query.scw
PDB file :
Tito_Scwrl_1VQ2.pdb
: