Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCTDVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILTEFNGEVPKTHAELESL-PGVGRKTANVVLSVGFGVPAIAVDTHVERISKRLGICRWKDSVVEVEETLKRKLPKELW------------SDAHHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFDG
3N5N Chain:X ((45-238))
-------------------------LDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYY-SRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARV-----LCRVRAIGADPSSTL---VSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQR---------
General information:
TITO was launched using:
RESULT:
Template:
3N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93045 for 1296 contacts (-71.8/contact) +
2D Compatibility (PS) -18538 + (NN) -10109 + (LL) 3400
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -131542.0 ( -101.50 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_3N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N5N-query.scw
PDB file :
Tito_Scwrl_3N5N.pdb
: