Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIKLLDEFLKKHNKTRYQLSKLTGISQNTLKDQNEKPLNKYTVSILRSLSLISGLSVSDVLFEL--EDIEKNSDDLAGFKHLLDKYKLSFPAQEFELYCLIKEFESAN----IEVLPFTFNRFENEEHVNIEKDVCKALENAITVLKEKKNELL
4S0F Chain:A ((547-643))
---------------------------------------------------LINGHSIKNISLELIRKKIAFVSQDVFIFSGTV-KENLCLGNENVDMDEIIKAAKMANAHDFIEKLPLKYDTFLNESGANLSEGQKQRLAIARALLKK------
General information:
TITO was launched using:
RESULT:
Template:
4S0F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24890 for 547 contacts (-45.5/contact) +
2D Compatibility (PS) -9354 + (NN) -2005 + (LL) 3920
1D Compatibility (HY) -5200 + (ID) 1400
Total energy: -38929.0 ( -71.17 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_4S0F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4S0F-query.scw
PDB file :
Tito_Scwrl_4S0F.pdb
: