Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTFKILTDSTSDLDEKWAQEHNVDIIGLTIEL-DGKTYETVGDEKITSDFLLERMQEGAKPTTSQINVGQFEEVFSTYAENDH-ALLYLALSSHLSGTYQSATIAREMVLDKYPDAQIEIVDTMAASCGEGVLAMLATKERQEGKSLEEVKQKIESLLPK--LNTYFLVDDLNHLMRSGRLSKGAAIIGSVAKIKPLLKLDSEGKLVPFAKTRGRKKGIKEIVTQATK-TLSYSTL-IIAYSGEKDSAQV-MKEQLLADERIEEVIIRPLGPVISAHVGSGALALFSLGEENR |
| 1VPV Chain:A ((16-291)) | ---KILVDSTADVPFSWMEKYDIDSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAGSVPKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEV-----DIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRV-----FVGNLLKIRVCLHIEN-GELIPYRKVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGVVELLNTLRKSYEVVDEIISPMGKVITTHVGPGTVGFGIEVLERK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108318 for 2234 contacts (-48.5/contact) +
2D Compatibility (PS) -28941 + (NN) -5664 + (LL) 764
1D Compatibility (HY) -22000 + (ID) 4250
Total energy: -168409.0 ( -75.38 by residue)
QMean score : 0.476
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