Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKYIKADRFFYADHVKENGYLEIKDNHFGKWIENISGQEEILDYSGYQIAPGLVDTHIHGFAGADVMD----CDSEGILRMSAGLLSTGVTSFLPTTLTSDTKRLEEASKSVAAVAGKEQGAKIQGIYFEGPYFTEEYKGAQNPIYMRNPNLEEFAQWQKAAKGLITKIALAPEREGVEEFVSAITKQGVTVALGHSNGTYKEAKKAVKAGASVWVHAYNGMRGLTHREPGMVGAVYNLPNTYAELICDGHHVDPVACDILMTQKGHNHVALITDCMAAGGAPDGDYMLGELPVVVSNGTARLKDGGNLAGSILKLKDGLKNVVE-WGIATPEEAVRMASYVPAVSVGIDNVCGQIKEGYAADFIVLDKHLDLVATYLDGEKRWQS |
1YRR Chain:A ((47-378)) | ---------------------------------------------NGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQAL-GLHLEGPWLNLVKK-THNPNFVRKPD-AALVDFLCENADVITKVTLAPEMVPAE-VISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKG-DKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLC-VDENGTLSGSSLTMIEGVRNLVEHCGIAL-DEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1YRR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -181235 for 2972 contacts (-61.0/contact) +
2D Compatibility (PS) -35491 + (NN) -16035 + (LL) 3324
1D Compatibility (HY) -20400 + (ID) 4950
Total energy: -254787.0 ( -85.73 by residue)
QMean score : 0.405
|
|
|