Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDPKKIARINELSKKKKTVGLTGEEKVEQAKLREEYIEGFRRSVRHHVEGIKLVDDEGNDVTPEKLRQVQREKGLHGRSLDDPNS
4BGV Chain:A ((280-317))
------------------IGKNGVEKIYDLKFNEDELEAWKKSVESVKKNSAIADDYFAKNQ-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4BGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1032 for 131 contacts (-7.9/contact) +
2D Compatibility (PS) -3953 + (NN) 344 + (LL) 2224
1D Compatibility (HY) -800 + (ID) 550
Total energy: -3767.0 ( -28.76 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_4BGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BGV-query.scw
PDB file :
Tito_Scwrl_4BGV.pdb
: