Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFENIIYGIDGNVATIMLNRPDISNGFNIPMCQEIIDAIRLVSENKDVMFLVIEAQGPIFSIGGDLKVMKAAVESDDISSLTKIAELVNQIS-YDLLQLEK-PVVMCVDGAVAGAAANIALAADFVIASKKSKFIQAFVGVGLAPDAGGLLLLSKSIGITRAVQLALTGESLSAEKAEALGIVYKLCESDKIGKIKDQLLKRLSRHSINSYQAIKSLAWEAAFKDWEQYKKLELQLQES--LAFKQDFKEGVRAHADRRRPNFLGK
2QQ3 Chain:A ((4-258))
--FVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMA----KDDPIRL----EWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAV--DYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRFQGK
General information:
TITO was launched using:
RESULT:
Template:
2QQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135924 for 2004 contacts (-67.8/contact) +
2D Compatibility (PS) -28076 + (NN) -12629 + (LL) 1516
1D Compatibility (HY) -12800 + (ID) 4100
Total energy: -192013.0 ( -95.81 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_2QQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQ3-query.scw
PDB file :
Tito_Scwrl_2QQ3.pdb
: