Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHYLRLDLKTPMINFNGALTHIPEKKWAFERSATIDKKLLLETLNLSDAIQAD--FIASEYRKNFYITMDNRDKINPQLFGVNEITDKMALDVTKITRNPNALLMQTRHKDKYELAKELRQHFNHELEVDSWGGPLNI-------LEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLP-YADQQIQWTNEEDGVAKTLEKLLL |
| 3PGV Chain:A ((22-284)) | ---QVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIRSYMITSNGARVHDSDGQQIF--AHNLDRDI---AADLFEIVRNDPKIVTNVYREDEWYM--NRHR-----FFKEAVFNYKLYEPGEL--DPQGISKVFFTCEDHEHLLPLEQAMNAR-----WGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANAHQRLKDLHPELEVIGSNADDAVPRYLRKLYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71778 for 2053 contacts (-35.0/contact) +
2D Compatibility (PS) -27011 + (NN) -12681 + (LL) 1916
1D Compatibility (HY) -14400 + (ID) 3650
Total energy: -127604.0 ( -62.15 by residue)
QMean score : 0.469
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