Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVTMTISGEMILIEYYGENFPLHPQEWKDYHSFWQEDYIRFHFQTDIGTLTIYDGNYDLTLLW------GEPVHRIEKLYHQLLTDPIPVMVYGDERFQEAYRTENGQTKNLYLEHVCNVCKEAYEVLFKQINQKERNT
4Q2D Chain:A ((377-426))
---------------------------------------DYLRHRYPEDVVVVNLVHGHSDLSALLQELRQKGEEIFQLQGVYDEALGDEQLGAVVAGQWFTRGKRALLPPYGVGTVDQALLAVLQVKHVFVRLFALSTKTV
General information:
TITO was launched using:
RESULT:
Template:
4Q2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8894 for 160 contacts (-55.6/contact) +
2D Compatibility (PS) -4687 + (NN) -1593 + (LL) 3084
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -17140.0 ( -107.12 by residue)
QMean score : -0.229
(partial model without unconserved sides chains):
PDB file :
Tito_4Q2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q2D-query.scw
PDB file :
Tito_Scwrl_4Q2D.pdb
: