Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVRKRKGAEEHLENNPHYVISNPEEAKGRWHEIFGNNNPIHIEVGSGKGAFITGMAEQNPDINYIGIDIQLSVLSYALDKVL--------DSGAKNIKLLLVDGSS-LSNYFDTGEVDLMYLNFSDPWPKKKHEKRRLTYKTFLDTYKDILPEQGEIHFKTDNRGLFEYSLASFSQYGMTLKQVWLDLHASDYQQNIMTEYERKFSNKGQVIYRVEARF
2VDU Chain:E ((63-199))
-------------------------------------------DIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDP---------RIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATDKFVACFTRLPTPAIL--
General information:
TITO was launched using:
RESULT:
Template:
2VDU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43920 for 815 contacts (-53.9/contact) +
2D Compatibility (PS) -12659 + (NN) -4430 + (LL) 2948
1D Compatibility (HY) -10400 + (ID) 1600
Total energy: -70061.0 ( -85.96 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2VDU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VDU-query.scw
PDB file :
Tito_Scwrl_2VDU.pdb
: