Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKLLEAFIKTKAYQNSCVIATYLSFDYEYNTQLLIKQALCDGKRVLVPK-TYPKGKMIFVDYQKDN----LRATPFGLLEP----VNDRAVEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDFEGDTISTIYRC-QRQDFVEEKHDVAVKEVLCL
3HY4 Chain:A ((10-181))
--KRSLRGELKQRLR-MSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLK-----------RCLQHQEVKPYTLALAFKEQICL
General information:
TITO was launched using:
RESULT:
Template:
3HY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76388 for 1148 contacts (-66.5/contact) +
2D Compatibility (PS) -17528 + (NN) -3598 + (LL) 772
1D Compatibility (HY) -10800 + (ID) 2600
Total energy: -110142.0 ( -95.94 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_3HY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HY4-query.scw
PDB file :
Tito_Scwrl_3HY4.pdb
: