Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSI-ANVTAGKVFHAWVSKGLSGASAAGIVGWVNSEGGFGKYS--W---NYRYVTTAELKNEG-----YTFYNPAKLGYQIMKSVGTVGK
2GBF Chain:A ((112-209))
---------------------------------------NTQWITWSQEGHKLAYVWKNDIYVKIEPHLPSHRITSTGKENVIFNGINDWVYEEEIFGAYSALWWSPNGTFLAYAQFNDTGVPLIEYSFYSDESLQYPKTVWIPYPKA
General information:
TITO was launched using:
RESULT:
Template:
2GBF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9089 for 490 contacts (18.5/contact) +
2D Compatibility (PS) -9642 + (NN) -3361 + (LL) 3084
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -7780.0 ( -15.88 by residue)
QMean score : 0.055
(partial model without unconserved sides chains):
PDB file :
Tito_2GBF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GBF-query.scw
PDB file :
Tito_Scwrl_2GBF.pdb
: