Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEKYQALKDEKLTWHLIGSLQRRKVKDVINYVDYF--HALDSVKLAAEIQKRAQK------PVKCFLQVNISREDSKHGFT-----IEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFFK
1CT5 Chain:A ((43-244))
-----------------------------LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDD-IKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKY--IKLNGLMTIGSW-------NRDFATLVEWKKKIDAKFGTSL---KLSMGMSADFREAIRQGTAEVRIGTDIFG
General information:
TITO was launched using:
RESULT:
Template:
1CT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95957 for 1407 contacts (-68.2/contact) +
2D Compatibility (PS) -19299 + (NN) -2524 + (LL) 2896
1D Compatibility (HY) -15200 + (ID) 3250
Total energy: -133334.0 ( -94.76 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1CT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CT5-query.scw
PDB file :
Tito_Scwrl_1CT5.pdb
: