Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIKKLLGLTTTVVISALILGACGQSKNEDAKVVRVGTMVKSKTEKARWDKIEELVKKK-GVKLKFTEFTDYTQPNKALESDEIDINAFQHYNYLNNWNKANKTNLVSVAETYFTSFRLYSGTKNGKGKYQTVSEIPNKATITIPNDAVNESRSLYLLQSAGLLKLKVSGDTLATMSDVVSNPKSLDLKEVDAAQTARSLDSTDA--AVINNDFVTEAGINP-KSAIFIEPKSKNAKQWYNLLVAQKGWQDKSKAKAIKEVVKAYHTDAVKKVIEKTSQGLDQPVW |
4YAH Chain:X ((29-265)) | -----------------------------DPNHIKVGVIVGAEQQVAEV--AQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSK------KIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKE---SPYVNLIVTR---EDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YAH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52287 for 1932 contacts (-27.1/contact) +
2D Compatibility (PS) -25084 + (NN) -10522 + (LL) 2332
1D Compatibility (HY) -19200 + (ID) 4400
Total energy: -109161.0 ( -56.50 by residue)
QMean score : 0.449
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