Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEE-DDVRSPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVMADILYSGGGHFDVYANDKKIVPFQECPLERCLL---------GVNSAMYAENDCGIAHLASETLGVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNY--------STRQKVMFLPKSKLNLIQSYLTKK
2FVZ Chain:A ((20-276))
----FQAAVQLALRAGQIIRKALTEE-------------TETDHLVEDLIISELRERFPSHRFIAEEA---KCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLH--AKAHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMACRVVAASTREMAMLIAQAL-----------
General information:
TITO was launched using:
RESULT:
Template:
2FVZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153642 for 1809 contacts (-84.9/contact) +
2D Compatibility (PS) -24067 + (NN) -14290 + (LL) 2656
1D Compatibility (HY) -12800 + (ID) 2900
Total energy: -205043.0 ( -113.35 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2FVZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FVZ-query.scw
PDB file :
Tito_Scwrl_2FVZ.pdb
: