Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIENQKLLLIYAPHLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVE-NQFNIKRHHYHSVEFLYFVNLL-GQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
4HFQ Chain:A ((72-160))
------------------VRAWIVEDEKICLVRGQGEDSWALPGGFGEVGYSPTENILKEIEEETGFKAKVERLLAVFDTNRFQLQSKQY--TKFVFGCKLLDGQFQENQEIADLQFFAIDQLPNLSEKRITKEQIELLWQVYQGHRGQYLD---
General information:
TITO was launched using:
RESULT:
Template:
4HFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54883 for 546 contacts (-100.5/contact) +
2D Compatibility (PS) -9430 + (NN) -803 + (LL) 1756
1D Compatibility (HY) -7200 + (ID) 1400
Total energy: -71960.0 ( -131.79 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_4HFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HFQ-query.scw
PDB file :
Tito_Scwrl_4HFQ.pdb
: