Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITF-----PEFTPGHDWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK
4N1U Chain:A ((7-136))
-SRLYTLVLVLQPQRVLL---GMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVH-----VFCTDSIQGTPVESDEMRPC---WFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDT-
General information:
TITO was launched using:
RESULT:
Template:
4N1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29038 for 902 contacts (-32.2/contact) +
2D Compatibility (PS) -13625 + (NN) -4567 + (LL) 1308
1D Compatibility (HY) -9600 + (ID) 2100
Total energy: -57622.0 ( -63.88 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_4N1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N1U-query.scw
PDB file :
Tito_Scwrl_4N1U.pdb
: