Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYSGKKAIVFSLFGIAFGYFCHRMILLYDSLPNQPPIEKIAYLFSDGQKVLMQQPWEFGFTKRSLLAFVSGFLSMCLVYLYVSTGQKIYREGAEYGSARFGTRKEKRFFYSKNPFNDTILAQDVRLTLLEKKSPKFDRNKNLIVIGGSGAGKTFRFVKANLIQLNCSN-----IVVDPKDHLAEKTGKLFLENGYQVKVLDLVNMTNSDGFNPFRYVETENDLNRTLTVYFNNTKGTGSRSDPFWDEASMTLVRAIASYLVDFYNPPGSAKEEAEQRRKRGCYPAFSEIGKLIKLLSKGDNQDKSVLEVMFEEYAKKYGTENFTMRNWADFQNYKDKTLDSVIAVTTAKFALFNIQSVIDVTKRDTLDLKTWGTQKTMVYLVIPDNDTTFRFLSALFFSTVFSTLTRQADVDFKGKLPIHVRSYLDEFPNIGEIPDFAEQTSTVRSRNMSLVPILQNIAQLQGLYKEKEAWKTILGNCDSLLYLGGNDEETFKFMSALLGKQTIDVRNTSRSFGQTGSGSLSHQKIARDLMTPDEVGRMRRDECLVRIAGVPVFRSKKYLPTRHKNWKLLAEKETDDRWCHYHINPLSHDEPLDLFDHKMRDLTAETTLH |
3FMP Chain:B ((112-186)) | ------------------------------------------------------------------------------------------------------------------FNRPSKIQENALPLMLAEPPQ-----NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FMP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 462 for 385 contacts (1.2/contact) +
2D Compatibility (PS) -7722 + (NN) -6000 + (LL) 27988
1D Compatibility (HY) -2800 + (ID) 1350
Total energy: 10578.0 ( 27.48 by residue)
QMean score : 0.280
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