Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIGIDKIGFATSQYVLEMTDLAIARQVDPEKFSKGLLLDSLSITPVTEDIVTLAASAANDILSDE--DKETIDMVIVATESSIDQSKAASVYVHQLLEI--QPFARSFEMKEACYSATAALDYAKLHVEKHP-DSKV-LVIASDIAKYGIKSTGESTQGAGSIAMLISQNPSILELKEDRLAQTRDIMDFWRPNY-SDVPYVNGMFSTKQYLDMLKTTWKEYQKRFNT------SLSDYAAFCFHIPFPKLALKGFNKILDNNLDEQKKAELQENFEHSITY-----------SKKIGNCYTGSLYLGLLSLLENSQNLKAGDQIAFFSYGSGAVAEIFTGQLVDGYQNKLQSDRMDQLNKRQKITVTEYEKLFFEKTILDENGNANFNTYRTGTFSLDSICEHQRIYKKINN |
| 2F9A Chain:A ((33-371)) | -------------------------------KYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYA-EGPARPTGGAAAIAMLIGPDAPIVFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDADYFVFHSPYNKLVQKSFARLLY---------------------YDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTSKEGILDLLAPGTYYLKEV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F9A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141936 for 2206 contacts (-64.3/contact) +
2D Compatibility (PS) -28627 + (NN) -11663 + (LL) 4328
1D Compatibility (HY) -20000 + (ID) 4650
Total energy: -202548.0 ( -91.82 by residue)
QMean score : 0.457
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