Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSQKVILTNMCLIEDNKGRIVMQIRDPKRYSWSGA-ALPGGHIEEGESLYDALVREVHEETGLTISNPKLVGM---KHWYTDEGIRYLVFLYKTYDFSGELQSSDEGDVVWIERSQLDKIELAYDMLNLLRVFDEDDISEMFYSKRLEDGFIRKFY
3HHJ Chain:A ((27-139))
-----SLLIVVACALLDQDNRVLLTQR-PEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGY--ETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEADKPLVQVLKNF--------------------
General information:
TITO was launched using:
RESULT:
Template:
3HHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57355 for 709 contacts (-80.9/contact) +
2D Compatibility (PS) -12168 + (NN) -7871 + (LL) 2048
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -84996.0 ( -119.88 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3HHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HHJ-query.scw
PDB file :
Tito_Scwrl_3HHJ.pdb
: