Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKMTINDIAQLSKTSKTTVSFFLNQKFEKMSDETRQRIQEVIDETGYRPSTIARSLNSKKTKLLGVLIGDITNTFSNQIVKGIEHITKQKGYQIIVGNSNYDAKSEEDYIENMLNLGVDGFIIQPTSNFRKYSRILKEKKKPMVFFDSQLYEHKTSWVKANNYDAVYDMTQECLNRGYKKFIMITADTSLLSTRIERASGFMDALKDNGFGYDTLVIEDDDHS-KSDIEDFLKAVVPDKEETLVF-APNCWALPMVFTAMKNLNFDMPR-VGLVGFDNIEWTDFSSPKVSTIVQPAYEEGEQVAQILINRIEGDDSVDNQQIVDCQMFWKESTF |
| 3OQO Chain:A ((3-321)) | ----ITIYDVAREANVSMATVSRVVNGN-PNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAA-QDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIG-AVAMRLLTKLMNKEPVE-EHIVELPHRIELRKS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OQO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125545 for 2581 contacts (-48.6/contact) +
2D Compatibility (PS) -34287 + (NN) -12250 + (LL) 672
1D Compatibility (HY) -19600 + (ID) 4400
Total energy: -195410.0 ( -75.71 by residue)
QMean score : 0.479
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