Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSITSVKKSKPFKLGVAGLLVGASLALPLSVSAASYTVKSGDTLSAIAKNHKTTVQELVSLNSISNADVISIGDVLKLDNSKASQAEAKSQPTIENSMNSSSNLSSSDSAAKEEIARRESNGSYTAQNGQYYGRYQLSQSYLNGDLSPENQEKVADNYVVSRYGSWSAALSFWNSNGWY
5C8P Chain:A ((56-103))
------------------------------VSTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVGGNFWDSARDVRLVDGGKVLEAELRYSGGWNRSRIYLDEHIGNRNGELIHC--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5C8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26822 for 297 contacts (-90.3/contact) +
2D Compatibility (PS) -5140 + (NN) -2423 + (LL) 3940
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -35395.0 ( -119.18 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_5C8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C8P-query.scw
PDB file :
Tito_Scwrl_5C8P.pdb
: