Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITKEQYFYFRQLDDFK-HFTIEQFDHIVSHIKHRTALKNHTLFFEGDYREKLFLIQSGHVKIEQSDASGSFIYTDYVRQGTVFPYGGLFLD--DDYHFSAVAITDIEYFSLPM-----ALYEEYSLQNINQMKHLCRKYSKLLRVHEIRLRNMVTSSASMRVIQSLATLL--LQVPTERG-HLPFPITTIEIANMSGTTRETVSHVLKELRQKDIVEMKGKKLLYNNKNYFKKFIE
2XKO Chain:A ((12-213))
---------FRELGSGKLPLQIEQFE------------RGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANV-----MLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQFS
General information:
TITO was launched using:
RESULT:
Template:
2XKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90211 for 1362 contacts (-66.2/contact) +
2D Compatibility (PS) -20990 + (NN) -7821 + (LL) 2664
1D Compatibility (HY) -18800 + (ID) 2850
Total energy: -138008.0 ( -101.33 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_2XKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XKO-query.scw
PDB file :
Tito_Scwrl_2XKO.pdb
: