Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGPRERMVVSAALLIRERGAHATAISDVLQHSGAPRGSAYHYFPGGRT--QLLCEAVDYAGEHVAAMINEAEG-GLELLDALIDKYRQQLLSTDF----RAGCPIAAVSVEAGDEQDRERMAPVIARAAAVFDRWSDLTAQRFIADGIPPDRAHELAVLATSTLEGAILLARVRRDLTPLDLVHRQLRNLLLAELPERSR
3RD3 Chain:A ((9-192))
----RQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLE--DYFRVYLADMDQRFSAPGLNARERLM-SYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRIT-LRDGSDGIIERLVGCLGQGRDDGSLAPCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLL---------
General information:
TITO was launched using:
RESULT:
Template:
3RD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71131 for 1239 contacts (-57.4/contact) +
2D Compatibility (PS) -19782 + (NN) -15821 + (LL) 872
1D Compatibility (HY) -9200 + (ID) 2250
Total energy: -117312.0 ( -94.68 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3RD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RD3-query.scw
PDB file :
Tito_Scwrl_3RD3.pdb
: