Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMQQAVSGITGALGGAVGGVMGPLTQLPQQAMQAGQGAMQPLMSALQQTYGAEGLDVADGARLVDSIEGEPGLGGEPGAGDVGAGGGGGGTTPTGYLGPPPVPTSSPPTTPAGAPAKSVTPDPVSGTPRASGPAGMTGMPMVPPGALGAGAEGANKDKPVEKRVTGCAEWSTGQGPLNSTAECSGEICRRQAGGHQVDATDPCCAERRQG |
| 4NAP Chain:A ((266-310)) | --------------------------LPEEDIAAMRRSVQPLFDAWAQRAADKGADPDAVMRTVDALKAQY------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1455 for 196 contacts (-7.4/contact) +
2D Compatibility (PS) -5022 + (NN) -2313 + (LL) 1240
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -9800.0 ( -50.00 by residue)
QMean score : 0.023
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