Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVV--AGEYNGEMAKVK----AMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGTFSEC----GVATYVWSMVMAYDSTKLARAPQSWADFWNVREFPGKRGL----RKGAKYTLEVALLADGVKAEDLYKVLATPEGVSRAFAKLDQLKPNI-QWWEAGAQPPQWLAAGDVVMSAAYN---GRIAAAQKEGVKLAIVWPGSLYDPEYWAVVKGTPNKALAEKFIAFASQPQTQKVFSEQIPYGPVHKGTLALLPKTVQEALPTAPANLEGARAVDAEF-------WVDHGEELEQRFNAWAAR |
| 4EDP Chain:A ((36-345)) | ------------------------------K--LVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKMKNNPNSQIDITYLAESFAE-------QGVEAGIFDKLDYSKIPNASEMNEKAKSTVEAGYGPAYTLNSIGIVVDPSAGIEI-NSWEDLWK-PELKNKIAIPDITTTNGPAMVEIAAEKAGVD-------VKTDNG-EAAFKELEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINV-IPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEKTAKALNESPVNKE--VKLSEEETKNLTYGPV-VDNAKVIDFKFVNSVMDQWVNNWNRIMN-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69400 for 2309 contacts (-30.1/contact) +
2D Compatibility (PS) -30561 + (NN) -11925 + (LL) 5692
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -124144.0 ( -53.77 by residue)
QMean score : 0.365
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