Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPPKIRRYIPADRDATLAIWLEASRVGHGFLGEAELQKQKALVRDHYLDASETWLALDGDTPLGFIGLLD-----AFIGGLFVAPTAHGRGIGRQLVEHAATLKGA---LEVEVYAANREALGFYARCGFVESGRRPRDDEGRALEIVQLRREH
3FNC Chain:A ((68-163))
------------------------------------------------------------ADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH
General information:
TITO was launched using:
RESULT:
Template:
3FNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55291 for 537 contacts (-103.0/contact) +
2D Compatibility (PS) -9580 + (NN) -2527 + (LL) 4504
1D Compatibility (HY) -7200 + (ID) 1250
Total energy: -71344.0 ( -132.86 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_3FNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNC-query.scw
PDB file :
Tito_Scwrl_3FNC.pdb
: