Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARICLHAYVGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGRGPRHAEVSAVEVEQMPLQGIAGFVVRR
2W4D Chain:A ((6-86))
------HLKIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVKWEQPKGEKGFRIVA
General information:
TITO was launched using:
RESULT:
Template:
2W4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28191 for 573 contacts (-49.2/contact) +
2D Compatibility (PS) -9020 + (NN) -4345 + (LL) 888
1D Compatibility (HY) -4800 + (ID) 2050
Total energy: -47518.0 ( -82.93 by residue)
QMean score : 0.745
(partial model without unconserved sides chains):
PDB file :
Tito_2W4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W4D-query.scw
PDB file :
Tito_Scwrl_2W4D.pdb
: