Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
1MYH Chain:A ((1-153))
-GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDRFKHLKSEDEMKASEDLKKHGNTVLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG
General information:
TITO was launched using:
RESULT:
Template:
1MYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67143 for 1132 contacts (-59.3/contact) +
2D Compatibility (PS) -16406 + (NN) -10364 + (LL) 208
1D Compatibility (HY) -18000 + (ID) 7100
Total energy: -118805.0 ( -104.95 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_1MYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MYH-query.scw
PDB file :
Tito_Scwrl_1MYH.pdb
: