Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKEA
1HMT Chain:A ((1-131))
-VDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKE-
General information:
TITO was launched using:
RESULT:
Template:
1HMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37284 for 920 contacts (-40.5/contact) +
2D Compatibility (PS) -14632 + (NN) -3753 + (LL) 352
1D Compatibility (HY) -17600 + (ID) 6550
Total energy: -79467.0 ( -86.38 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1HMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HMT-query.scw
PDB file :
Tito_Scwrl_1HMT.pdb
: