Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE-PKKSRRCVLL
1HH4 Chain:A ((2-189))
-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKC---
General information:
TITO was launched using:
RESULT:
Template:
1HH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147760 for 1481 contacts (-99.8/contact) +
2D Compatibility (PS) -20225 + (NN) -12711 + (LL) 752
1D Compatibility (HY) -24000 + (ID) 6550
Total energy: -210494.0 ( -142.13 by residue)
QMean score : 0.750
(partial model without unconserved sides chains):
PDB file :
Tito_1HH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HH4-query.scw
PDB file :
Tito_Scwrl_1HH4.pdb
: