Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGITVLAALLACASSCGVPSFPPNLSARVVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCISNTRTYRVAVGKNNLEVEDEEGSLFVGVDTIHVHKRWNA--LLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAGGDGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQL
1C1M Chain:A ((1-237))
-----------------------------VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLN-QNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI--
General information:
TITO was launched using:
RESULT:
Template:
1C1M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172389 for 2007 contacts (-85.9/contact) +
2D Compatibility (PS) -25706 + (NN) -7129 + (LL) 2444
1D Compatibility (HY) -22400 + (ID) 6250
Total energy: -231430.0 ( -115.31 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1C1M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C1M-query.scw
PDB file :
Tito_Scwrl_1C1M.pdb
: