Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
3GGJ Chain:A ((4-217))
----SPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
General information:
TITO was launched using:
RESULT:
Template:
3GGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184088 for 1674 contacts (-110.0/contact) +
2D Compatibility (PS) -23849 + (NN) -12278 + (LL) 504
1D Compatibility (HY) -34400 + (ID) 10650
Total energy: -264761.0 ( -158.16 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_3GGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GGJ-query.scw
PDB file :
Tito_Scwrl_3GGJ.pdb
: