Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFQYFQRMTTVSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPKGAHFLAKSLDDALELIEDPELTNKVDVVWIVGGSSVYKEAMNKPGHVRLFVTRIMQEFESDAFFPEIDFEKYKLLPEYPGVPLDVQEEKGIKYKFEVYEKNN
1U70 Chain:A ((1-186))
-VRPLNCIVAVSQNMGIGKNGDRPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEKGIKYKFEVYEKKD
General information:
TITO was launched using:
RESULT:
Template:
1U70.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112081 for 1382 contacts (-81.1/contact) +
2D Compatibility (PS) -19842 + (NN) -8163 + (LL) 208
1D Compatibility (HY) -25200 + (ID) 8300
Total energy: -173378.0 ( -125.45 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1U70.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U70-query.scw
PDB file :
Tito_Scwrl_1U70.pdb
: