Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
1U70 Chain:A ((1-184))
VRPLNCIVAVSQNMGIGKNGDRPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEKGIKYKFEVYEK-----
General information:
TITO was launched using:
RESULT:
Template:
1U70.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120329 for 1367 contacts (-88.0/contact) +
2D Compatibility (PS) -19743 + (NN) -8548 + (LL) 604
1D Compatibility (HY) -24000 + (ID) 7050
Total energy: -179066.0 ( -130.99 by residue)
QMean score : 0.735
(partial model without unconserved sides chains):
PDB file :
Tito_1U70.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U70-query.scw
PDB file :
Tito_Scwrl_1U70.pdb
: