Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
4EQE Chain:B ((14-128))
-----------RPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
General information:
TITO was launched using:
RESULT:
Template:
4EQE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75383 for 811 contacts (-93.0/contact) +
2D Compatibility (PS) -12631 + (NN) -10215 + (LL) 1392
1D Compatibility (HY) -16000 + (ID) 5750
Total energy: -118587.0 ( -146.22 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_4EQE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EQE-query.scw
PDB file :
Tito_Scwrl_4EQE.pdb
: