Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES
2QTM Chain:A ((1-189))
MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRDITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES
General information:
TITO was launched using:
RESULT:
Template:
2QTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156930 for 1414 contacts (-111.0/contact) +
2D Compatibility (PS) -21186 + (NN) -15479 + (LL) 0
1D Compatibility (HY) -30000 + (ID) 9400
Total energy: -232995.0 ( -164.78 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_2QTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QTM-query.scw
PDB file :
Tito_Scwrl_2QTM.pdb
: