Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLGAYLGHK
1YSW Chain:A ((1-164))
--HAGRTGYDNREIVMKYIHYKLSQRGYEWDAGD---------------DVEENRTEAPEGTE--------------------------SEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMR--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97659 for 1131 contacts (-86.3/contact) +
2D Compatibility (PS) -17542 + (NN) -9861 + (LL) 3716
1D Compatibility (HY) -22400 + (ID) 7500
Total energy: -151246.0 ( -133.73 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1YSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSW-query.scw
PDB file :
Tito_Scwrl_1YSW.pdb
: