Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4LI7 Chain:A ((9-212))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHA---GMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGR-------YAEYVIYRGEQAYPEYLITYQIMKPEA--
General information:
TITO was launched using:
RESULT:
Template:
4LI7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63917 for 1542 contacts (-41.5/contact) +
2D Compatibility (PS) -21220 + (NN) -9399 + (LL) 48
1D Compatibility (HY) -25200 + (ID) 9650
Total energy: -129338.0 ( -83.88 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4LI7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LI7-query.scw
PDB file :
Tito_Scwrl_4LI7.pdb
: