Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IQLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMVKPLLFHKK
4OAR Chain:A ((7-256))
-QLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSR---------MSEVIAAQLPKILAGMVKPLLFH--
General information:
TITO was launched using:
RESULT:
Template:
4OAR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144520 for 1764 contacts (-81.9/contact) +
2D Compatibility (PS) -25445 + (NN) -10581 + (LL) 1224
1D Compatibility (HY) -42400 + (ID) 12050
Total energy: -233772.0 ( -132.52 by residue)
QMean score : 0.733
(partial model without unconserved sides chains):
PDB file :
Tito_4OAR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OAR-query.scw
PDB file :
Tito_Scwrl_4OAR.pdb
: