Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKHIINSYENINNTARNNSDCPRVVLPEEIFFTISIVGVLENLIVLLAVFKNKNLQAPMYFFICSLAISDMLGSLYKILENILIILRNMGYLKPRGSFETTADDIIDSLFVLSLL-GSIFSLSVIAADRYITIFHALRYHSIVTMRRTVVVLTVIWTFC-------------------TGTGITMVIFSHHVP-TVITFTSLFPLMLV---FILCLYVHMFLLARSHTRKISTLP----------RANMKGAITLTILLGVFIFCWAPFVLHVLLMTFCPSNPYCACYMSLFQVNGMLIMCNAVIDPFIYAFRSPELRDAFKKMIFCSRYW |
| 3VGA Chain:A ((15-303)) | --------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI---------STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAI--VLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239768 for 1805 contacts (-132.8/contact) +
2D Compatibility (PS) -25173 + (NN) -7700 + (LL) 2568
1D Compatibility (HY) -31200 + (ID) 4100
Total energy: -305373.0 ( -169.18 by residue)
QMean score : 0.290
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