Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDVVDSLLVNGSNITPPCELGLENETLFCLDQPRPSKEWQPAVQILLYSLIFLLSVLG---NTLVITVLIRNKRMRTVTNIFLLSLAVSDLMLCLFCMPFNLIPNLLKDFIFGSAVCKTTTYFMGTSVSVSTFNLVAISLERYGAICKPLQSRVWQTKSHALKVIAATWCLSFTIMTPYPI--YSNLVPFTKNNNQTANMCRFLLPN-DVMQQSWHTFLLLILFLIPGIVMMVAYGLISLELYQGIKFEASQKKSAKERKPSTTSSGKYEDSDGCYLQKTRPPRKLELRQLSTGSSSRANRIRSNSSAANLMAKKRVIRMLIVIVVLFFLCWMPIFSANAWRAYDTASAERRLSGTPISFIL--LLSYTSSCVNPIIYCFMNKRFRLGFMATFPCCPNPGPPGARGEVGEEEEGGTTGASLSRFSYSHMSASVPPQ |
| 3PXO Chain:A ((32-326)) | -----------------------------------AEPWQFS---MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAFTWVMALACAAP-PLVGWSRYIP---EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV----------KEAAAQQQESATT------------QK---------------------------------AEKEVTRMVIIMVIAFLICWLP-YAGVAFYIFTHQGSDFG----PIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN-------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PXO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216690 for 2197 contacts (-98.6/contact) +
2D Compatibility (PS) -29794 + (NN) -12287 + (LL) 5508
1D Compatibility (HY) -35200 + (ID) 4550
Total energy: -293013.0 ( -133.37 by residue)
QMean score : 0.209
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