Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASILNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP-LLFGFNTTGDPTV----CSI---SNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKRI-------------------LTRQNSQCNSVRPGFPQQTLSPDPAHLE-LKRYYSICQDTALGGPGFQERGGELKR-EEKTRNSLSPTIAPKLSLEVRKLSNGRLSTSLKLGPLQPRGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC |
| 4U16 Chain:A ((22-388)) | --------------------------------------LALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMN-LFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYR---AKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIY---KETEKMNIFEMLRIDEGGGSGGDEAEKLFNQDVDA-AVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWD--AYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSC-IPKTYWNLGYWLCYINSTVNPVCYALCN------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U16.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192386 for 2423 contacts (-79.4/contact) +
2D Compatibility (PS) -33845 + (NN) 1007 + (LL) 4288
1D Compatibility (HY) -31600 + (ID) 5000
Total energy: -257536.0 ( -106.29 by residue)
QMean score : 0.163
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