Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYFLLDLCLADGIRSAVCFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFC-ISVTRYMAIAHHRFYAKRMTLWTCAAVICMAWTLSVAMAFPPVF-------DVGTYKFIREEDQCIF--EHRYFKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPGATGQAAANWIAGFGRGPMPPTLLGIRQNGHAASR-RLLGMDEVKGEKQLGRMFYAITLLFLLLWSPYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHAPCWGTGGAPAPREPYCVM |
2YCW Chain:A ((16-294)) | --------------------------LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT-WLWGSFLCELWTSLDVL-CVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRV--------YREAKEQ------------------------------------------IRKIDRASKRKRVMLMREHKALKTLG----IIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPII-YCRSPDFRKAFKRLLAF---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -264490 for 2005 contacts (-131.9/contact) +
2D Compatibility (PS) -27999 + (NN) -12219 + (LL) 4208
1D Compatibility (HY) -28800 + (ID) 3750
Total energy: -333050.0 ( -166.11 by residue)
QMean score : 0.281
|
|
|