Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALNDCFLLNLEVDHFMHCNISSHSADLPVNDDWSHPGILYVIPAVYGVIILIGLIGNITLIKIFCTVKSMRNVPNLFISSLALGDLLLLITCAPVDASRYLADRWLFGRIGCKLIPFIQLTSVGVSVFTLTALSADRYKAIVRPMDIQASHALMKICLKAAFIWIISMLLAIPEAVFSDLHPFHEESTNQTFISC-APYPHSNELHPKIHSMASFLVFYVIPLSIISVYYYFI---AKNLIQSAYNLPVEGNIHVKKQIESRKRLA--------KTVLVFVGLFAFCWLPNHVIYLYRSYHYSEVDTSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLCCQPGLIIRSHSTGRSTTCMTSLKSTNPSVATFSLINGNICHERYV |
| 3SN6 Chain:R ((188-490)) | ---------------------------------------------VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS-----FLPIQMHWYR---QEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID--KSEGR--------------CLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV-----IQDNLIRKEVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQ-ELLC--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216501 for 1951 contacts (-111.0/contact) +
2D Compatibility (PS) -26356 + (NN) -1632 + (LL) 7416
1D Compatibility (HY) -27200 + (ID) 3850
Total energy: -268123.0 ( -137.43 by residue)
QMean score : 0.239
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