Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNASCCLPSVQPTLPNGSEHLQAPFFSNQSSSAFCEQVFIKPEVFLSLGIVSLLENILVILAVVRNGNLHSPMYFFLCSLAVADMLVSVSNALETIMIAIVHSDYLTFEDQFIQ--HMDNIFDSMICISLVASICNLLAIAVDRYVTIFYALRYHSIMTVRKALTLIVAIWVCCGVCGVVFIVY------SESKM-------VIVCLIT-----------MFFA----MMLLMGTLYVHMFLFARLHVKRIAALP-PADGVAPQQHSCMKGAVTITILLGVFIFCWAPFFLHLVLIIT-----CPTNPYCICYTAHFNTYLVLIMCNSVIDPLIYAFRSLELRNTFREILCGCNGMNLG |
| 3VGA Chain:A ((12-303)) | -------------------------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGV--------LAIPFA--ITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ-----SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLP--LHIINCFTFFCPDCSHAPLWLMYLA-----IVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -294760 for 1828 contacts (-161.2/contact) +
2D Compatibility (PS) -25270 + (NN) -4718 + (LL) 3576
1D Compatibility (HY) -30800 + (ID) 4500
Total energy: -356472.0 ( -195.01 by residue)
QMean score : 0.322
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