Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSPWNGSDGPEGAREPPWPALPPCDERRCSPFPLGALVPVTAVCLCLFVVGVSGNVVTVMLIGRYRDMRT---TTNLYLGSMAVSDLLILLG-LPFDLYR-LWRSRPWVFGPLLCRLSLYVGEGCTYATLLHMTALSVERYLAICRPLRARVLVTRRRVRALIAVLWAVALLSAGPFLFLVGVEQDPGISVVPGLNGTARIASSPLASSPPLWLSRAPPPSPPSGPETAEAAALFSRECRPSPAQLGALRVMLWVTTAYFFL-PFLCLSILYGLIGREL--WSSRRPLRGPAAS-GRERGHRQTVRVLLVVVLAFIICWLPFHVGRIIYINTEDSR----MMYFSQYFNIVALQLFYLSASINPILYNLISKKYRAAAFKLLLARKSRPRGFHRSRDTAGEVAGDTGGDTVGYTETSANVKTMG |
| 4XES Chain:A ((33-345)) | --------------------------------------VLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQ------------------------------NRSADGTHPGGL-----------VCTP-IVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMV-----------PGRVQALRHGVLVLRAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALFYASSAINPILYNLVSANFRQVFLSTNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XES.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238598 for 1972 contacts (-121.0/contact) +
2D Compatibility (PS) -27893 + (NN) -17095 + (LL) 2188
1D Compatibility (HY) -34400 + (ID) 5850
Total energy: -321648.0 ( -163.11 by residue)
QMean score : 0.308
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