Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQGNGSALPNASQPVLRGDGARPSWLASALACVLIFTIVVDILGNLLVILSVYRNKKLRNAGNIFVVSLAVADLVVAIYPYPLVLMSIFNNGWNLGYLHCQVSGFLMGLSVIGSIFNITGIAINRYCYICHSLKYDKLYSSKNSLCYVLLIWLLT-LAAVLPNLRAGTLQYDPRIYSCTFAQS-----VSSAYTIAVVVFHFLVPMIIVIFCYLRIWILVLQVRQRVKPDRKPKLKP------QDFRNFVTMFVVFVLFAICWAPLNFIGLAVASDPASMVPRIPEWLFVASYYMAYFNSCLNAIIYGLLNQNFRKEYRRIIVSLCTARVFFVDSSNDVADRVKWKPSPLMTNNNVVKVDSV |
2Y00 Chain:A ((12-299)) | ---------------------------AGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY---REAKEQ-----------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR----DLVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLA--------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -268888 for 1962 contacts (-137.0/contact) +
2D Compatibility (PS) -26664 + (NN) -6511 + (LL) 4128
1D Compatibility (HY) -28800 + (ID) 3650
Total energy: -330385.0 ( -168.39 by residue)
QMean score : 0.315
|
|
|