Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVSLNHPASNTTSTKNNNSAFFYFESCQPPSPALLLLCIAYTVVLIVGLFGNLSLIIIIFKKQRKAQNFTSILIANLSLSDTLVCVMCIHFTIIYTLMDHWIFGDTMCRLTSYVQSVSISVSIFSLVFTAVERYQLIVNP-RGWKPSVTHAYWGITLIWLFSLLLSIPFFLSYHLTDEPFRNLSLPTDLYTHQVACVENWPSKKDRLLFTTSLFLLQYFVPLGFILICYLKIVICLRRRNAKVDKKKENEGRLNENKRINTMLISIVVTFGACWLPRISSMSSLTGIMRC
3CAP Chain:A ((42-267))
----------------------------------------AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPH--------EETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA---QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS
General information:
TITO was launched using:
RESULT:
Template:
3CAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177378 for 1601 contacts (-110.8/contact) +
2D Compatibility (PS) -22616 + (NN) -4454 + (LL) 2784
1D Compatibility (HY) -26400 + (ID) 2700
Total energy: -230764.0 ( -144.14 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_3CAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CAP-query.scw
PDB file :
Tito_Scwrl_3CAP.pdb
: