Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLNSSAPGTPGTPAADPFQRAQAGLEEALLAPGFGNASGNASERVLAAPSSELDVNTDIYSKVLVTAVYLALFVVGTVGNTVTAFTLARKKSLQSLQSTVHYHLGSLALSDLLTLLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVERYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAVPMLFTMGEQNRSADGQHAGGLVCTPTIHTATVKVVIQVNTFMSFIFPMVVISVLNTIIANKLTVMVRQAAEQGQVCTVGGEHSTFSMAIEPGRVQALRHGVRVLRAVVIAFVVCWLPYHVRRL---MFCYISDEQWTPFLYDFYHYFYMVTNALFYVSSTINPILYNLVSANFRHIFLATLACLCPVWRRRRKRPAFSRKADSVSSNHTLSSNATRETLY |
4EA3 Chain:A ((125-404)) | --------------------------------------------------------------KVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKT---ATNIYIFNLALADTL-VLLTLPFQGTDILLGF--WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP-------TSSKAQAVNVAIWALASVVGVPVAIMGSAQ---VEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRL---------RGVRLLSGSRE----------KDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAIL--------RFCTALGYVNSCLNPILYAFLDENFKACFR------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EA3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203809 for 2052 contacts (-99.3/contact) +
2D Compatibility (PS) -27112 + (NN) -2808 + (LL) 8560
1D Compatibility (HY) -27200 + (ID) 4150
Total energy: -256519.0 ( -125.01 by residue)
QMean score : 0.375
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